Package: longmixr 1.2.0

Jonas Hagenberg

longmixr: Longitudinal Consensus Clustering with 'flexmix'

An adaption of the consensus clustering approach from 'ConsensusClusterPlus' for longitudinal data. The longitudinal data is clustered with flexible mixture models from 'flexmix', while the consensus matrices are hierarchically clustered as in 'ConsensusClusterPlus'. By using the flexibility from 'flexmix' and 'FactoMineR', one can use mixed data types for the clustering.

Authors:Jonas Hagenberg [aut, cre], Matt Wilkerson [aut, cph], Peter Waltman [aut, cph], Max Planck Institute of Psychiatry [cph]

longmixr_1.2.0.tar.gz
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longmixr.pdf |longmixr.html
longmixr/json (API)
NEWS

# Install 'longmixr' in R:
install.packages('longmixr', repos = c('https://cellmapslab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/cellmapslab/longmixr/issues

Datasets:

On CRAN:

4.18 score 3 stars 7 scripts 149 downloads 6 exports 52 dependencies

Last updated 9 months agofrom:be8d46f3e1. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 13 2024
R-4.5-winOKOct 13 2024
R-4.5-linuxOKOct 13 2024
R-4.4-winOKOct 13 2024
R-4.4-macOKOct 13 2024
R-4.3-winOKOct 13 2024
R-4.3-macOKOct 13 2024

Exports:crosssectional_consensus_clusterget_clusterslongitudinal_consensus_clusterplot_alluvialplot_spaghettitest_clustering_methods

Dependencies:ALLbackportsBiobaseBiocGenericscheckmatecliclustercolorspaceConsensusClusterPlusDBIdplyrfansifarverflexmixgenericsggplot2gluegtableisobandlabelinglatticelifecyclelpSolvemagrittrMASSMatrixmgcvminqamitoolsmodeltoolsmunsellnlmennetnumDerivpillarpkgconfigproxyR6RColorBrewerRcppRcppArmadillorlangscalesStatMatchsurveysurvivaltibbletidyselectutf8vctrsviridisLitewithr

Example clustering analysis

Rendered fromanalysis_workflow.Rmdusingknitr::rmarkdownon Oct 13 2024.

Last update: 2024-02-06
Started: 2021-11-19