Package: longmixr 1.2.0

Jonas Hagenberg

longmixr: Longitudinal Consensus Clustering with 'flexmix'

An adaption of the consensus clustering approach from 'ConsensusClusterPlus' for longitudinal data. The longitudinal data is clustered with flexible mixture models from 'flexmix', while the consensus matrices are hierarchically clustered as in 'ConsensusClusterPlus'. By using the flexibility from 'flexmix' and 'FactoMineR', one can use mixed data types for the clustering.

Authors:Jonas Hagenberg [aut, cre], Matt Wilkerson [aut, cph], Peter Waltman [aut, cph], Max Planck Institute of Psychiatry [cph]

longmixr_1.2.0.tar.gz
longmixr_1.2.0.zip(r-4.5)longmixr_1.2.0.zip(r-4.4)longmixr_1.2.0.zip(r-4.3)
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longmixr_1.2.0.tar.gz(r-4.5-noble)longmixr_1.2.0.tar.gz(r-4.4-noble)
longmixr_1.2.0.tgz(r-4.4-emscripten)longmixr_1.2.0.tgz(r-4.3-emscripten)
longmixr.pdf |longmixr.html
longmixr/json (API)
NEWS

# Install 'longmixr' in R:
install.packages('longmixr', repos = c('https://cellmapslab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/cellmapslab/longmixr/issues

Pkgdown site:https://cellmapslab.github.io

Datasets:

On CRAN:

Conda:

4.18 score 3 stars 7 scripts 163 downloads 6 exports 52 dependencies

Last updated 1 years agofrom:be8d46f3e1. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 12 2025
R-4.5-winOKMar 12 2025
R-4.5-macOKMar 12 2025
R-4.5-linuxOKMar 12 2025
R-4.4-winOKMar 12 2025
R-4.4-macOKMar 12 2025
R-4.4-linuxOKMar 12 2025
R-4.3-winOKMar 12 2025
R-4.3-macOKMar 12 2025

Exports:crosssectional_consensus_clusterget_clusterslongitudinal_consensus_clusterplot_alluvialplot_spaghettitest_clustering_methods

Dependencies:ALLbackportsBiobaseBiocGenericscheckmatecliclustercolorspaceConsensusClusterPlusDBIdplyrfansifarverflexmixgenericsggplot2gluegtableisobandlabelinglatticelifecyclelpSolvemagrittrMASSMatrixmgcvminqamitoolsmodeltoolsmunsellnlmennetnumDerivpillarpkgconfigproxyR6RColorBrewerRcppRcppArmadillorlangscalesStatMatchsurveysurvivaltibbletidyselectutf8vctrsviridisLitewithr

Example clustering analysis

Rendered fromanalysis_workflow.Rmdusingknitr::rmarkdownon Mar 12 2025.

Last update: 2024-02-06
Started: 2021-11-19